STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mfer_1144KEGG: mst:Msp_0078 hypothetical protein; SPTR: Q2NI53 Hypothetical membrane-spanning protein. (111 aa)    
Predicted Functional Partners:
Mfer_1143
KEGG: msi:Msm_0099 hypothetical protein; SPTR: B9AD51 Putative uncharacterized protein.
       0.787
Mfer_1145
Cyclic nucleotide-binding protein; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR000595: IPR001959: IPR010095; KEGG: tko:TK0931 transposase; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Q5JI88 Probable transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region.
       0.561
Your Current Organism:
Methanothermus fervidus
NCBI taxonomy Id: 523846
Other names: M. fervidus DSM 2088, Methanothermus fervidus ATCC 43054, Methanothermus fervidus DSM 2088, Methanothermus fervidus V24S, Methanothermus fervidus str. DSM 2088, Methanothermus fervidus strain DSM 2088
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.