Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| TON_0765 | TON_1299 | TON_0765 | TON_1299 | RNA-binding protein; Containing KH domain. | snoRNP component; Nop56p/58p-like protein. | 0.987 |
| TON_0765 | csl4 | TON_0765 | TON_0377 | RNA-binding protein; Containing KH domain. | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.954 |
| TON_0765 | nep1 | TON_0765 | TON_0428 | RNA-binding protein; Containing KH domain. | Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.999 |
| TON_0765 | rps11 | TON_0765 | TON_0104 | RNA-binding protein; Containing KH domain. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| TON_0765 | rps4 | TON_0765 | TON_0103 | RNA-binding protein; Containing KH domain. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| TON_0765 | rps6e | TON_0765 | TON_1945 | RNA-binding protein; Containing KH domain. | SSU ribosomal protein S6E; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.999 |
| TON_0765 | rrp42 | TON_0765 | TON_0031 | RNA-binding protein; Containing KH domain. | 3'-5' exoribonuclease; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.931 |
| TON_0765 | rtcA | TON_0765 | TON_0048 | RNA-binding protein; Containing KH domain. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.914 |
| TON_0765 | tmcA | TON_0765 | TON_0968 | RNA-binding protein; Containing KH domain. | Hypothetical ATPase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.999 |
| TON_1299 | TON_0765 | TON_1299 | TON_0765 | snoRNP component; Nop56p/58p-like protein. | RNA-binding protein; Containing KH domain. | 0.987 |
| TON_1299 | csl4 | TON_1299 | TON_0377 | snoRNP component; Nop56p/58p-like protein. | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.938 |
| TON_1299 | nep1 | TON_1299 | TON_0428 | snoRNP component; Nop56p/58p-like protein. | Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.999 |
| TON_1299 | rps11 | TON_1299 | TON_0104 | snoRNP component; Nop56p/58p-like protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.979 |
| TON_1299 | rps4 | TON_1299 | TON_0103 | snoRNP component; Nop56p/58p-like protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.973 |
| TON_1299 | rps6e | TON_1299 | TON_1945 | snoRNP component; Nop56p/58p-like protein. | SSU ribosomal protein S6E; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.994 |
| TON_1299 | rrp42 | TON_1299 | TON_0031 | snoRNP component; Nop56p/58p-like protein. | 3'-5' exoribonuclease; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.929 |
| TON_1299 | rtcA | TON_1299 | TON_0048 | snoRNP component; Nop56p/58p-like protein. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.943 |
| TON_1299 | tmcA | TON_1299 | TON_0968 | snoRNP component; Nop56p/58p-like protein. | Hypothetical ATPase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.999 |
| csl4 | TON_0765 | TON_0377 | TON_0765 | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | RNA-binding protein; Containing KH domain. | 0.954 |
| csl4 | TON_1299 | TON_0377 | TON_1299 | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | snoRNP component; Nop56p/58p-like protein. | 0.938 |
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