STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps27eSSU ribosomal protein S27E. (65 aa)    
Predicted Functional Partners:
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
  
 
 0.987
rps17e
SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
 
 
 0.981
rpl15e
LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.960
rps24e
SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.956
rpl40e
LSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 
 0.952
rpl21e
LSU ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.
 
 
 0.941
rpl18e
Hypothetical 50S ribosomal protein L18; Similar to protein PH1636 of Pyrococcus horikoshii OT3; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 
 0.939
rps13
SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
   
   0.938
rpl31e
LSU ribosomal protein L31E; Belongs to the eukaryotic ribosomal protein eL31 family.
 
 
 0.933
TON_1865
Hypothetical zinc-ribbon RNA-binding protein involved in translation.
  
   0.920
Your Current Organism:
Thermococcus onnurineus
NCBI taxonomy Id: 523850
Other names: T. onnurineus NA1, Thermococcus onnurineus NA1, Thermococcus onnurineus str. NA1, Thermococcus onnurineus strain NA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.