STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TON_0453Component of the U3 small nucleolar ribonucleoprotein; Probably involved in the biogenesis of the ribosome. (213 aa)    
Predicted Functional Partners:
TON_1737
Hypothetical protein, conserved; UPF0113 family.
   
 
 0.948
TON_0356
Predicted GTPase; Containing NOG1 domain.
  
 
 0.922
rpl30
LSU ribosomal protein L30P.
   
 
 0.907
TON_1299
snoRNP component; Nop56p/58p-like protein.
  
   0.879
TON_0765
RNA-binding protein; Containing KH domain.
  
   0.877
rps8e
SSU ribosomal protein S8E.
   
 
 0.872
TON_1052
Hypothetical nucleic acid-binding protein; Containing PIN domain and zinc-ribbon module.
  
  
 0.871
rpl34e
LSU ribosomal protein L34E; Belongs to the eukaryotic ribosomal protein eL34 family.
  
   0.850
eif6
Translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
 
 0.850
rrp4
RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.
 
    0.848
Your Current Organism:
Thermococcus onnurineus
NCBI taxonomy Id: 523850
Other names: T. onnurineus NA1, Thermococcus onnurineus NA1, Thermococcus onnurineus str. NA1, Thermococcus onnurineus strain NA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.