Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TON_0979DEAD/DEAH box RNA helicase. (846 aa)    
Predicted Functional Partners:
TON_0980
Transcription regulator; Lrp/AsnC family.
       0.881
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.
       0.867
TON_0007
RecJ-like exonuclease; Containing OB-fold nucleic acid-binding domains.
  
    0.717
TON_1105
Hypothetical ATPase; PP-loop superfamily.
  
     0.685
TON_0982
Hypothetical protein, conserved.
       0.648
TON_0306
Nonsense-mediated mRNA decay protein; NMD3-like protein.
  
     0.595
TON_0955
Hypothetical protein, conserved.
  
     0.565
TON_1505
RNA-binding protein; Containing PUA domain.
  
     0.551
TON_1231
Archaeal heat shock regulator; ArsR family.
  
     0.549
TON_1238
snoRNP component; Gar1-like protein.
  
     0.502
Your Current Organism:
Thermococcus onnurineus
NCBI taxonomy Id: 523850
Other names: T. onnurineus NA1, Thermococcus onnurineus NA1, Thermococcus onnurineus str. NA1, Thermococcus onnurineus strain NA1
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