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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK47129.1Lactoylglutathione lyase family protein. (165 aa)    
Predicted Functional Partners:
SFK52912.1
Urea carboxylase.
  
 
 0.810
SFL38527.1
NADPH2:quinone reductase.
  
 0.717
SFK88528.1
CDP-4-dehydro-6-deoxyglucose reductase.
   
 
 0.658
trpB
Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
  0.546
SFK11893.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.495
SFK83525.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
 
 0.478
SFK43082.1
NADPH-dependent glutamate synthase beta chain.
   
 
  0.468
SFK76417.1
Dienelactone hydrolase.
   
 
  0.450
SFL16773.1
Protocatechuate 3,4-dioxygenase, beta subunit.
     
 0.450
SFL12176.1
Citrate synthase; Belongs to the citrate synthase family.
     
 0.447
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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