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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK56920.1Uncharacterized membrane protein YtjA, UPF0391 family. (55 aa)    
Predicted Functional Partners:
SFK70558.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.851
SFK56876.1
Small-conductance mechanosensitive channel.
 
    0.543
SFK29564.1
BON domain-containing protein.
 
    0.513
SFK27284.1
Osmotically-inducible protein OsmY, contains BON domain.
  
    0.463
SFK15441.1
Hypothetical protein.
  
    0.447
SFK16254.1
Lipase (class 3).
  
    0.447
SFK27395.1
Hyperosmotically inducible protein.
  
    0.447
SFK56943.1
Hypothetical protein.
       0.435
SFL35655.1
Uncharacterized conserved protein YbaA, DUF1428 family.
  
    0.425
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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