Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SFK56920.1Uncharacterized membrane protein YtjA, UPF0391 family. (55 aa)    
Predicted Functional Partners:
SFK70558.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.850
SFK56876.1
Small-conductance mechanosensitive channel.
 
    0.610
SFK29564.1
BON domain-containing protein.
 
    0.587
SFK27284.1
Osmotically-inducible protein OsmY, contains BON domain.
  
    0.544
SFK15441.1
Hypothetical protein.
  
    0.532
SFK16254.1
Lipase (class 3).
  
    0.532
SFK27395.1
Hyperosmotically inducible protein.
  
    0.532
SFL35655.1
Uncharacterized conserved protein YbaA, DUF1428 family.
  
    0.461
SFK56943.1
Hypothetical protein.
       0.435
SFK43167.1
Hypothetical protein.
   
  
 0.419
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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