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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK79451.1Predicted O-linked N-acetylglucosamine transferase, SPINDLY family. (819 aa)    
Predicted Functional Partners:
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.938
SFK60557.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
 0.908
SFK39099.1
Tetratricopeptide repeat-containing protein.
 
 0.897
SFL01904.1
Tetratricopeptide repeat-containing protein.
0.877
SFK95403.1
Tfp pilus assembly protein PilF.
0.870
SFK90720.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.847
SFL09590.1
Tetratricopeptide repeat-containing protein.
 
 0.815
SFK26629.1
Tetratricopeptide repeat-containing protein.
 
 0.812
SFK17049.1
Adenylate cyclase.
    
  0.803
SFK17076.1
FecR family protein.
  
 0.794
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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