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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK90056.1Fe(3+) dicitrate transport protein. (693 aa)    
Predicted Functional Partners:
SFK89983.1
Predicted arabinose efflux permease, MFS family.
 
     0.937
SFK90006.1
Siderophore synthetase component.
 
     0.936
SFK90030.1
ATP-grasp domain-containing protein.
 
     0.928
SFK89961.1
Siderophore synthetase component.
 
     0.907
SFK89916.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.863
SFK89938.1
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.844
SFK89895.1
Uncharacterized iron-regulated membrane protein.
 
   
 0.756
SFK17076.1
FecR family protein.
  
 
 0.679
SFK13485.1
FecR family protein.
  
 
 0.679
SFK22930.1
FecR family protein.
 
 
 0.671
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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