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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK93622.1Conjugal transfer pilus assembly protein TraV. (210 aa)    
Predicted Functional Partners:
SFK93647.1
Conjugal transfer ATP-binding protein TraC.
 
     0.957
SFK93693.1
Conjugal transfer pilus assembly protein TraF.
 
     0.951
SFK93711.1
Conjugative transfer pilus assembly protein TraH.
 
     0.943
SFK93602.1
Conjugal transfer pilus assembly protein TraB.
 
     0.938
SFK93734.1
Conjugal transfer mating pair stabilization protein TraG.
 
     0.936
SFK93556.1
Conjugal transfer pilus assembly protein TraE.
 
     0.928
SFK93671.1
Hypothetical protein.
       0.820
SFK93202.1
Type-1V conjugative transfer system mating pair stabilisation.
 
     0.804
SFK93158.1
Conjugal transfer pilus assembly protein TraU.
 
     0.803
SFK93179.1
Conjugal transfer pilus assembly protein TrbC.
 
     0.792
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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