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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK98199.1Serine/threonine-protein kinase HipA. (416 aa)    
Predicted Functional Partners:
SFK98177.1
Helix-turn-helix.
 
   0.972
SFL26025.1
Helix-turn-helix.
 
   0.882
SFK98218.1
Hypothetical protein.
       0.737
SFL35573.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
   0.560
SFK98119.1
DNA polymerase V.
       0.516
SFK98135.1
SOS response UmuD protein. Serine peptidase. MEROPS family S24; Belongs to the peptidase S24 family.
       0.516
SFK65996.1
Helix-turn-helix.
  
   0.478
SFK63819.1
Helix-turn-helix domain-containing protein.
  
   0.478
SFK85381.1
Hypothetical protein.
  
   0.478
SFL14764.1
Helix-turn-helix.
  
   0.478
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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