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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL04807.1CAAX protease self-immunity. (279 aa)    
Predicted Functional Partners:
SFL26621.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.884
SFK71536.1
Hypothetical protein.
 
    0.841
SFK71586.1
Protein of unknown function.
 
    0.820
SFK86791.1
Protein of unknown function.
  
  
 0.786
SFK46602.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.533
SFL01205.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.533
SFL39678.1
Ribosome-dependent ATPase.
  
  
 0.474
SFL40035.1
Ribosome-dependent ATPase.
  
  
 0.474
SFK61667.1
Hypothetical protein.
  
     0.464
SFK28272.1
Hypothetical protein.
  
     0.445
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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