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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL19337.1Hypothetical protein. (235 aa)    
Predicted Functional Partners:
SFL19357.1
Hypothetical protein/copper transport protein.
 
     0.914
SFL19379.1
BNR repeat-like domain-containing protein.
 
     0.856
SFL19396.1
Hypothetical protein.
 
     0.773
SFL19411.1
TonB dependent receptor.
 
     0.767
SFK17076.1
FecR family protein.
  
     0.753
SFK13485.1
FecR family protein.
  
     0.752
SFL18786.1
Hypothetical protein.
  
     0.739
SFK36912.1
Ammonia monooxygenase subunit A.
  
     0.733
SFK36940.1
Ammonia monooxygenase subunit B.
  
     0.730
SFL19432.1
TonB-dependent Receptor Plug Domain.
 
     0.718
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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