Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL31779.1Flagellar motor switch protein FliM. (99 aa)    
Predicted Functional Partners:
SFK44504.1
Flagellar motor switch protein FliN.
 
 0.995
SFL12695.1
Flagellar motor switch protein FliG.
 
 0.995
SFK84078.1
Flagellar protein FlgJ.
 
 
 0.991
SFL31796.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
 
 0.991
SFK83904.1
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.978
flgH
Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 0.977
SFL12669.1
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
 0.977
SFK44528.1
Flagellar motor switch protein FliM.
 
     0.974
flgI
Flagellar P-ring protein precursor FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 0.973
SFK83993.1
Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
  
 
 0.970
Your Current Organism:
Nitrosomonas aestuarii
NCBI taxonomy Id: 52441
Other names: Nitrosomonas aestuarii Koops et al. 2001, strain Nm 36
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