STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL92572.1CRISPR-associated protein, Csx6 family. (369 aa)    
Predicted Functional Partners:
SFM69549.1
PAS domain S-box-containing protein.
  
 0.999
SFM12533.1
PAS domain S-box-containing protein.
  
 0.990
SFM12620.1
PAS domain S-box-containing protein.
  
 0.990
SFL92173.1
PAS fold.
  
 0.971
SFM12449.1
PAS domain S-box-containing protein.
  
 0.971
SFM63781.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.967
SFL92598.1
Protein of unknown function.
 
     0.943
SFM27902.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.913
SFL82651.1
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
    
 
 0.900
cas2
CRISPR-associated protein, Cas2 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.884
Your Current Organism:
Nitrosomonas nitrosa
NCBI taxonomy Id: 52442
Other names: N. nitrosa, Nitrosomonas nitrosa Koops et al. 2001, strain Nm 90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.