STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL92808.1CRISPR-associated protein, Csm3 family. (240 aa)    
Predicted Functional Partners:
SFL92762.1
CRISPR-associated protein, Csm5 family.
 
 
 0.999
SFL92786.1
CRISPR-associated protein Csm4.
 
 
 0.999
SFL92841.1
CRISPR-associated protein Csm2.
  
 
 0.998
SFL92877.1
CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE.
 
 
 0.998
SFL92726.1
Uncharacterized conserved protein.
 
   
 0.939
SFL92598.1
Protein of unknown function.
 
     0.636
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.525
SFL92572.1
CRISPR-associated protein, Csx6 family.
 
     0.422
Your Current Organism:
Nitrosomonas nitrosa
NCBI taxonomy Id: 52442
Other names: N. nitrosa, Nitrosomonas nitrosa Koops et al. 2001, strain Nm 90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.