STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM05451.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (250 aa)    
Predicted Functional Partners:
clsB
Cardiolipin synthase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
 
 
  0.908
SFM08754.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.908
nadA
Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.707
SFM06160.1
Maltooligosyl trehalose synthase.
    
 0.690
treS
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
  
 
  0.619
SFM25084.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
 
 
 0.513
SFM16466.1
Diacylglycerol kinase family enzyme.
  
 
  0.457
SFL93176.1
Glutathione S-transferase.
  
    0.430
SFM22986.1
SpoIIAA-like.
  
     0.422
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
     0.420
Your Current Organism:
Nitrosomonas nitrosa
NCBI taxonomy Id: 52442
Other names: N. nitrosa, Nitrosomonas nitrosa Koops et al. 2001, strain Nm 90
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