STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM12620.1PAS domain S-box-containing protein. (1384 aa)    
Predicted Functional Partners:
SFL82737.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 0.999
SFL92173.1
PAS fold.
 
0.999
SFL89291.1
PAS domain S-box-containing protein.
 
0.999
SFL89350.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
 0.999
SFM12449.1
PAS domain S-box-containing protein.
 
0.999
SFM12533.1
PAS domain S-box-containing protein.
 
0.999
SFM12573.1
PAS domain S-box-containing protein.
 
0.999
SFM12595.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 0.999
SFM12749.1
Hypothetical protein.
 
0.999
SFM12854.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
0.999
Your Current Organism:
Nitrosomonas nitrosa
NCBI taxonomy Id: 52442
Other names: N. nitrosa, Nitrosomonas nitrosa Koops et al. 2001, strain Nm 90
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