Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFL96154.1 | SFM66640.1 | SAMN05421880_10337 | SAMN05421880_1261 | Thioredoxin; Belongs to the thioredoxin family. | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | 0.583 |
SFL96154.1 | fur | SAMN05421880_10337 | SAMN05421880_12070 | Thioredoxin; Belongs to the thioredoxin family. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.575 |
SFM24836.1 | fur | SAMN05421880_11069 | SAMN05421880_12070 | Manganese/iron transport system permease protein/iron/zinc/copper transport system permease protein. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.508 |
SFM55274.1 | bamE | SAMN05421880_12071 | SAMN05421880_12069 | Hypothetical protein. | Beta-barrel assembly machine subunit BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.553 |
SFM55274.1 | fur | SAMN05421880_12071 | SAMN05421880_12070 | Hypothetical protein. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.773 |
SFM63890.1 | SFM66640.1 | SAMN05421880_12443 | SAMN05421880_1261 | Superkiller protein 3. | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | 0.864 |
SFM63890.1 | fur | SAMN05421880_12443 | SAMN05421880_12070 | Superkiller protein 3. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.493 |
SFM63890.1 | rpoA | SAMN05421880_12443 | SAMN05421880_11628 | Superkiller protein 3. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.974 |
SFM66640.1 | SFL96154.1 | SAMN05421880_1261 | SAMN05421880_10337 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Thioredoxin; Belongs to the thioredoxin family. | 0.583 |
SFM66640.1 | SFM63890.1 | SAMN05421880_1261 | SAMN05421880_12443 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Superkiller protein 3. | 0.864 |
SFM66640.1 | fur | SAMN05421880_1261 | SAMN05421880_12070 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.741 |
bamE | SFM55274.1 | SAMN05421880_12069 | SAMN05421880_12071 | Beta-barrel assembly machine subunit BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Hypothetical protein. | 0.553 |
bamE | fur | SAMN05421880_12069 | SAMN05421880_12070 | Beta-barrel assembly machine subunit BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.669 |
birA | fur | SAMN05421880_101132 | SAMN05421880_12070 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.448 |
birA | rpoA | SAMN05421880_101132 | SAMN05421880_11628 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.535 |
fur | SFL96154.1 | SAMN05421880_12070 | SAMN05421880_10337 | Ferric uptake regulator, Fur family; Belongs to the Fur family. | Thioredoxin; Belongs to the thioredoxin family. | 0.575 |
fur | SFM24836.1 | SAMN05421880_12070 | SAMN05421880_11069 | Ferric uptake regulator, Fur family; Belongs to the Fur family. | Manganese/iron transport system permease protein/iron/zinc/copper transport system permease protein. | 0.508 |
fur | SFM55274.1 | SAMN05421880_12070 | SAMN05421880_12071 | Ferric uptake regulator, Fur family; Belongs to the Fur family. | Hypothetical protein. | 0.773 |
fur | SFM63890.1 | SAMN05421880_12070 | SAMN05421880_12443 | Ferric uptake regulator, Fur family; Belongs to the Fur family. | Superkiller protein 3. | 0.493 |
fur | SFM66640.1 | SAMN05421880_12070 | SAMN05421880_1261 | Ferric uptake regulator, Fur family; Belongs to the Fur family. | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | 0.741 |
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