STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM85113.1Protein of unknown function VcgC/VcgE. (171 aa)    
Predicted Functional Partners:
SFM87019.1
Hypothetical protein.
  
     0.692
SFM74614.1
Transglycosylase SLT domain-containing protein.
  
     0.689
SFM85134.1
TrkA-C domain-containing protein.
       0.623
SFM85162.1
Histidine decarboxylase.
 
     0.576
SFM10634.1
Hypothetical protein.
  
     0.556
SFM01760.1
Protein of unknown function.
  
     0.540
SFM45575.1
L,D-transpeptidase catalytic domain.
  
     0.540
SFM52111.1
Tetratricopeptide repeat-containing protein.
  
     0.534
SFM19714.1
Hypothetical protein.
  
     0.508
SFM34310.1
Putative exosortase-associated protein, TIGR04073 family.
  
     0.506
Your Current Organism:
Nitrosomonas nitrosa
NCBI taxonomy Id: 52442
Other names: N. nitrosa, Nitrosomonas nitrosa Koops et al. 2001, strain Nm 90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.