STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddes_0033PFAM: peptidase M50; KEGG: lip:LI0021 Zn-dependent proteases. (224 aa)    
Predicted Functional Partners:
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
 
     0.750
Ddes_0032
TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; KEGG: dvl:Dvul_2825 tryptophanyl-tRNA synthetase.
       0.748
Ddes_0031
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.698
Ddes_0029
KEGG: dvl:Dvul_0294 hypothetical protein.
       0.693
Ddes_0034
KEGG: dvu:DVU0136 hypothetical protein.
       0.584
Ddes_0035
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: mla:Mlab_0460 hypothetical protein.
     
 0.542
Ddes_0036
PFAM: nucleoside recognition domain protein; KEGG: dvl:Dvul_2272 hypothetical protein.
       0.485
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.