Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Ddes_0100PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bcz:BCZK2117 homoserine/threonine efflux protein. (234 aa)    
Predicted Functional Partners:
Ddes_0099
PFAM: aconitate hydratase domain protein; KEGG: dsy:DSY4204 hypothetical protein.
       0.623
Ddes_0101
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dvl:Dvul_2464 isocitrate/isopropylmalate dehydrogenase.
       0.426
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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