node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
frr | pyrH | Ddes_0519 | Ddes_0520 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.976 |
frr | rplA | Ddes_0519 | Ddes_1633 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.962 |
frr | rplD | Ddes_0519 | Ddes_0661 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.919 |
frr | rplI | Ddes_0519 | Ddes_2022 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.891 |
frr | rplK | Ddes_0519 | Ddes_1632 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.943 |
frr | rplT | Ddes_0519 | Ddes_0487 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.957 |
frr | rpsB | Ddes_0519 | Ddes_0346 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | PFAM: ribosomal protein S2; KEGG: dvl:Dvul_2108 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.976 |
frr | rpsE | Ddes_0519 | Ddes_0677 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.911 |
frr | tsf | Ddes_0519 | Ddes_0347 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.981 |
frr | tuf | Ddes_0519 | Ddes_1628 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.441 |
pyrH | frr | Ddes_0520 | Ddes_0519 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.976 |
pyrH | rplA | Ddes_0520 | Ddes_1633 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.817 |
pyrH | rplI | Ddes_0520 | Ddes_2022 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.482 |
pyrH | rplK | Ddes_0520 | Ddes_1632 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.543 |
pyrH | rpsB | Ddes_0520 | Ddes_0346 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | PFAM: ribosomal protein S2; KEGG: dvl:Dvul_2108 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.896 |
pyrH | tsf | Ddes_0520 | Ddes_0347 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.954 |
rplA | frr | Ddes_1633 | Ddes_0519 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.962 |
rplA | pyrH | Ddes_1633 | Ddes_0520 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.817 |
rplA | rplD | Ddes_1633 | Ddes_0661 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.993 |
rplA | rplI | Ddes_1633 | Ddes_2022 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.985 |