node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ddes_0650 | Ddes_0651 | Ddes_0650 | Ddes_0651 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dvl:Dvul_2015 4-hydroxybenzoate polyprenyltransferase, putative; Belongs to the UbiA prenyltransferase family. | 0.693 |
Ddes_0650 | Ddes_0770 | Ddes_0650 | Ddes_0770 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid. | 0.561 |
Ddes_0650 | Ddes_1295 | Ddes_0650 | Ddes_1295 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | PFAM: protein of unknown function UPF0227; KEGG: abo:ABO_2495 hypothetical protein. | 0.569 |
Ddes_0650 | coaE | Ddes_0650 | Ddes_1600 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.690 |
Ddes_0650 | rplB | Ddes_0650 | Ddes_0663 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.547 |
Ddes_0650 | rplE | Ddes_0650 | Ddes_0672 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.547 |
Ddes_0650 | rplS | Ddes_0650 | Ddes_1790 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.547 |
Ddes_0650 | rplW | Ddes_0650 | Ddes_0662 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.563 |
Ddes_0650 | rplY | Ddes_0650 | Ddes_1452 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.551 |
Ddes_0650 | rpmG | Ddes_0650 | Ddes_1629 | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | PFAM: ribosomal protein L33; KEGG: dvl:Dvul_0446 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.683 |
Ddes_0651 | Ddes_0650 | Ddes_0651 | Ddes_0650 | TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dvl:Dvul_2015 4-hydroxybenzoate polyprenyltransferase, putative; Belongs to the UbiA prenyltransferase family. | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | 0.693 |
Ddes_0770 | Ddes_0650 | Ddes_0770 | Ddes_0650 | Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid. | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | 0.561 |
Ddes_1295 | Ddes_0650 | Ddes_1295 | Ddes_0650 | PFAM: protein of unknown function UPF0227; KEGG: abo:ABO_2495 hypothetical protein. | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | 0.569 |
coaE | Ddes_0650 | Ddes_1600 | Ddes_0650 | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; Belongs to the UPF0307 family. | 0.690 |
coaE | rplB | Ddes_1600 | Ddes_0663 | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.614 |
coaE | rplE | Ddes_1600 | Ddes_0672 | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.640 |
coaE | rplS | Ddes_1600 | Ddes_1790 | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.700 |
coaE | rplW | Ddes_1600 | Ddes_0662 | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.560 |
coaE | rplY | Ddes_1600 | Ddes_1452 | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.652 |
coaE | rpmG | Ddes_1600 | Ddes_1629 | Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | PFAM: ribosomal protein L33; KEGG: dvl:Dvul_0446 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.403 |