Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ddes_0803PFAM: Domain of unknown function DUF1844; KEGG: dvl:Dvul_2448 hypothetical protein. (112 aa)    
Predicted Functional Partners:
Ddes_1443
Putative RNA polymerase, sigma 70 family subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.639
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.604
Ddes_0342
PFAM: phosphoesterase RecJ domain protein; KEGG: lip:LI0703 exopolyphosphatase-like protein.
 
     0.583
Ddes_1213
KEGG: dvl:Dvul_0780 hypothetical protein.
  
     0.558
Ddes_0611
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dvl:Dvul_0891 surface antigen (D15).
  
     0.543
Ddes_1206
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.506
Ddes_1251
PFAM: protein of unknown function DUF164; KEGG: dvl:Dvul_1624 hypothetical protein.
  
     0.502
Ddes_0804
PFAM: aminotransferase class V; KEGG: dvu:DVU0494 aminotransferase, class V.
       0.467
Ddes_1212
KEGG: dvl:Dvul_0781 hypothetical protein.
  
     0.428
Ddes_1059
KEGG: lip:LI0102 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2.
       0.401
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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