STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddes_1069PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lip:LI0500 branched chain amino acid ABC transporter, ATP-binding protein. (240 aa)    
Predicted Functional Partners:
Ddes_1067
PFAM: inner-membrane translocator; KEGG: lip:LI0498 branched chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.991
Ddes_1480
PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.991
Ddes_0474
PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2252 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
Ddes_1066
PFAM: inner-membrane translocator; KEGG: lip:LI0497 branched chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.985
Ddes_2116
PFAM: inner-membrane translocator; KEGG: dvu:DVU2742 high-affinity branched chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.970
Ddes_2115
PFAM: inner-membrane translocator; KEGG: dvl:Dvul_0563 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.964
Ddes_0473
PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2253 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.963
Ddes_1479
PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2396 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.961
Ddes_1065
PFAM: Extracellular ligand-binding receptor; KEGG: lip:LI0496 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein.
 
  
 0.882
Ddes_1068
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lip:LI0499 branched chain amino acid ABC transporter, ATP-binding protein.
 
  
0.805
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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