STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddes_1237KEGG: dvl:Dvul_0523 cytochrome c family protein. (247 aa)    
Predicted Functional Partners:
Ddes_1238
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dvl:Dvul_0522 electron transport complex protein RnfC, putative.
 
     0.908
rnfG
FMN-binding domain protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
     0.905
Ddes_1239
NQR2 and RnfD family protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
     0.860
rnfE
Electron transport complex, RnfABCDGE type, E subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
     0.757
Ddes_2013
PFAM: cytochrome c class III; KEGG: dvl:Dvul_0215 cytochrome c, class III.
  
     0.755
Ddes_1445
KEGG: dvu:DVU1582 hypothetical protein.
  
     0.738
Ddes_0548
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; KEGG: dvl:Dvul_1843 glycosyl transferase family protein.
  
     0.728
Ddes_1419
KEGG: dvl:Dvul_1426 hypothetical protein.
  
     0.713
Ddes_0909
PFAM: HesB/YadR/YfhF-family protein; KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
     0.706
Ddes_1780
PFAM: TOBE domain protein; KEGG: dvl:Dvul_2790 TOBE domain-containing protein.
  
     0.697
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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