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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddes_2007PFAM: major facilitator superfamily MFS_1; KEGG: dvl:Dvul_2415 major facilitator superfamily transporter. (459 aa)    
Predicted Functional Partners:
Ddes_2207
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvl:Dvul_2236 uroporphyrin-III C-methyltransferase.
  
  
 0.598
Ddes_1688
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cti:RALTA_B1296 opine oxidase subunit A; pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.552
Ddes_2061
PFAM: Acyl transferase; KEGG: sco:SCO5892 polyketide synthase.
  
  
 0.551
Ddes_0451
PFAM: Nitrate reductase gamma subunit; KEGG: dvl:Dvul_1775 nitrate reductase, gamma subunit.
  
  
 0.545
Ddes_0840
PFAM: Nitrate reductase gamma subunit; KEGG: afu:AF0545 hypothetical protein.
  
  
 0.545
Ddes_1147
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dvu:DVU1231 ammonium transporter.
  
  
 0.501
Ddes_1708
KEGG: dvl:Dvul_1026 hypothetical protein.
 
  
 0.499
Ddes_2008
PFAM: methylenetetrahydrofolate reductase; KEGG: dvl:Dvul_1992 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.497
Ddes_0846
KEGG: dvl:Dvul_2409 hmc operon protein 5.
  
  
 0.481
Ddes_1269
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
     
 0.445
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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