STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddes_2018KEGG: dvl:Dvul_0219 AsnC family transcriptional regulator. (159 aa)    
Predicted Functional Partners:
Ddes_0286
Putative transcriptional regulator, AsnC family; KEGG: lip:LI0207 transcriptional regulators.
 
 
  
0.992
Ddes_0287
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2128 radical SAM domain-containing protein.
  
 0.926
Ddes_0289
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2126 radical SAM domain-containing protein.
  
 0.854
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dvl:Dvul_0218 glutamate-1-semialdehyde-2,1-aminomutase.
     
 0.554
Ddes_2207
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvl:Dvul_2236 uroporphyrin-III C-methyltransferase.
 
  
 0.550
Ddes_2019
KEGG: dvl:Dvul_0805 hypothetical protein.
     
 0.512
Ddes_1875
PFAM: Hpt domain protein; KEGG: pmy:Pmen_0835 multi-sensor hybrid histidine kinase.
     
 0.473
Ddes_1876
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dvl:Dvul_0934 heavy metal translocating P-type ATPase.
     
 0.437
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.