Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEH64079.1 | EEH64156.1 | HMPREF0044_1098 | HMPREF0044_0627 | Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | 0.491 |
EEH64155.1 | EEH64156.1 | HMPREF0044_0626 | HMPREF0044_0627 | Hypothetical protein. | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | 0.432 |
EEH64156.1 | EEH64079.1 | HMPREF0044_0627 | HMPREF0044_1098 | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.491 |
EEH64156.1 | EEH64155.1 | HMPREF0044_0627 | HMPREF0044_0626 | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | Hypothetical protein. | 0.432 |
EEH64156.1 | EEH64157.1 | HMPREF0044_0627 | HMPREF0044_0628 | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | Hypothetical protein. | 0.550 |
EEH64156.1 | ychF | HMPREF0044_0627 | HMPREF0044_0629 | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.652 |
EEH64157.1 | EEH64156.1 | HMPREF0044_0628 | HMPREF0044_0627 | Hypothetical protein. | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | 0.550 |
EEH64157.1 | ychF | HMPREF0044_0628 | HMPREF0044_0629 | Hypothetical protein. | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.773 |
ychF | EEH64156.1 | HMPREF0044_0629 | HMPREF0044_0627 | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | RmuC domain protein; COG: COG1322; Pfam: PF02646; InterPro: IPR003798. | 0.652 |
ychF | EEH64157.1 | HMPREF0044_0629 | HMPREF0044_0628 | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | Hypothetical protein. | 0.773 |