Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEH63705.1 | EEH63834.1 | HMPREF0044_0724 | HMPREF0044_0853 | Transglycosylase-like domain protein; Pfam: PF03990,PF07501,PF06737; InterPro: IPR011098. | Hypothetical protein. | 0.587 |
EEH63830.1 | EEH63834.1 | HMPREF0044_0849 | HMPREF0044_0853 | Exonuclease SbcCD, C subunit; COG: COG0419. | Hypothetical protein. | 0.659 |
EEH63830.1 | EEH63835.1 | HMPREF0044_0849 | HMPREF0044_0854 | Exonuclease SbcCD, C subunit; COG: COG0419. | RNA polymerase sigma-70 factor; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014293; Belongs to the sigma-70 factor family. ECF subfamily. | 0.474 |
EEH63830.1 | aroA | HMPREF0044_0849 | HMPREF0044_0852 | Exonuclease SbcCD, C subunit; COG: COG0419. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.661 |
EEH63830.1 | rsgA | HMPREF0044_0849 | HMPREF0044_0851 | Exonuclease SbcCD, C subunit; COG: COG0419. | Putative ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.660 |
EEH63830.1 | rsrA | HMPREF0044_0849 | HMPREF0044_0855 | Exonuclease SbcCD, C subunit; COG: COG0419. | Mycothiol system anti-sigma-R factor; InterPro: IPR014295. | 0.474 |
EEH63830.1 | sbcD | HMPREF0044_0849 | HMPREF0044_0850 | Exonuclease SbcCD, C subunit; COG: COG0419. | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.999 |
EEH63834.1 | EEH63705.1 | HMPREF0044_0853 | HMPREF0044_0724 | Hypothetical protein. | Transglycosylase-like domain protein; Pfam: PF03990,PF07501,PF06737; InterPro: IPR011098. | 0.587 |
EEH63834.1 | EEH63830.1 | HMPREF0044_0853 | HMPREF0044_0849 | Hypothetical protein. | Exonuclease SbcCD, C subunit; COG: COG0419. | 0.659 |
EEH63834.1 | EEH63835.1 | HMPREF0044_0853 | HMPREF0044_0854 | Hypothetical protein. | RNA polymerase sigma-70 factor; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014293; Belongs to the sigma-70 factor family. ECF subfamily. | 0.658 |
EEH63834.1 | EEH64315.1 | HMPREF0044_0853 | HMPREF0044_0052 | Hypothetical protein. | Hypothetical protein. | 0.624 |
EEH63834.1 | EEH64359.1 | HMPREF0044_0853 | HMPREF0044_0096 | Hypothetical protein. | Hypothetical protein. | 0.556 |
EEH63834.1 | EEH64724.1 | HMPREF0044_0853 | HMPREF0044_0461 | Hypothetical protein. | Hypothetical protein. | 0.605 |
EEH63834.1 | aroA | HMPREF0044_0853 | HMPREF0044_0852 | Hypothetical protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.820 |
EEH63834.1 | rsgA | HMPREF0044_0853 | HMPREF0044_0851 | Hypothetical protein. | Putative ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.820 |
EEH63834.1 | rsrA | HMPREF0044_0853 | HMPREF0044_0855 | Hypothetical protein. | Mycothiol system anti-sigma-R factor; InterPro: IPR014295. | 0.608 |
EEH63834.1 | sbcD | HMPREF0044_0853 | HMPREF0044_0850 | Hypothetical protein. | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.661 |
EEH63835.1 | EEH63830.1 | HMPREF0044_0854 | HMPREF0044_0849 | RNA polymerase sigma-70 factor; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014293; Belongs to the sigma-70 factor family. ECF subfamily. | Exonuclease SbcCD, C subunit; COG: COG0419. | 0.474 |
EEH63835.1 | EEH63834.1 | HMPREF0044_0854 | HMPREF0044_0853 | RNA polymerase sigma-70 factor; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014293; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.658 |
EEH63835.1 | aroA | HMPREF0044_0854 | HMPREF0044_0852 | RNA polymerase sigma-70 factor; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014293; Belongs to the sigma-70 factor family. ECF subfamily. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.655 |
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