STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEI87243.1DNA-binding helix-turn-helix protein; Pfam: PF01381; InterPro: IPR001387. (145 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
    
 0.878
nifJ-2
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037; InterPro: IPR011895.
    
 0.878
nadE
NAD+ synthase; COG: COG0171; Pfam: PF00795,PF02540; InterPro: IPR014445; Belongs to the NAD synthetase family.
    
 0.742
pyk
Pyruvate kinase; COG: COG0469; Pfam: PF00224,PF02887,PF00391; InterPro: IPR001697; Belongs to the pyruvate kinase family.
     
  0.638
recU
Prophage LambdaCh01, recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation. Belongs to the RecU family.
  
     0.577
EEI87244.1
Hypothetical protein.
       0.560
lacD
Putative tagatose-bisphosphate aldolase; COG: COG3684; Pfam: PF01791; InterPro: IPR013785; Belongs to the aldolase LacD family.
    
  0.519
cinA
Competence/damage-inducible domain protein CinA; COG: COG1058; Pfam: PF00994,PF02464; InterPro: IPR008135; Belongs to the CinA family.
    
 0.490
repA-2
Replication initiator protein A domain protein; Pfam: PF06970; InterPro: IPR010724.
 
  
 0.468
EEI86135.1
Phage tail tape measure protein, TP901 family; InterPro: IPR010090.
  
     0.448
Your Current Organism:
Anaerococcus lactolyticus
NCBI taxonomy Id: 525254
Other names: A. lactolyticus ATCC 51172, Anaerococcus lactolyticus ATCC 51172, Anaerococcus lactolyticus str. ATCC 51172, Anaerococcus lactolyticus strain ATCC 51172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.