STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
livKReceptor family ligand-binding protein; COG: COG0683; Pfam: PF01094; InterPro: IPR001828. (389 aa)    
Predicted Functional Partners:
EEI86945.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG4177; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
EEI86944.1
ABC transporter, ATP-binding protein; COG: COG0411; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.997
EEI86946.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG0559; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
EEI86943.1
ABC transporter, ATP-binding protein; COG: COG0410; Pfam: PF00005; InterPro: IPR003439.
 
 
 0.996
gatA
aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
 
 0.654
EEI86627.1
Transcriptional regulator, LuxR family; Pfam: PF00196; InterPro: IPR000792.
    
 0.580
EEI85779.1
Transcriptional regulator, LuxR family; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR001789.
    
 0.580
EEI86659.1
ABC transporter, permease protein; COG: COG0765; Pfam: PF00497,PF00528; InterPro: IPR001638.
 
 
 0.572
ureB
Urease, beta subunit; COG: COG0832; Pfam: PF00699; InterPro: IPR002019; Belongs to the urease beta subunit family.
     
 0.559
EEI86459.1
ABC transporter, ATP-binding protein; COG: COG1129; Pfam: PF00005; InterPro: IPR003439.
    
 0.511
Your Current Organism:
Anaerococcus lactolyticus
NCBI taxonomy Id: 525254
Other names: A. lactolyticus ATCC 51172, Anaerococcus lactolyticus ATCC 51172, Anaerococcus lactolyticus str. ATCC 51172, Anaerococcus lactolyticus strain ATCC 51172
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