STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEI85444.1Hypothetical protein. (293 aa)    
Predicted Functional Partners:
EEI86183.1
Sigma-70 region 2; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.812
EEI85917.1
RNA polymerase sigma factor, sigma-70 family; Pfam: PF08281; InterPro: IPR014284.
  
 
 0.812
EEI85862.1
Hypothetical protein.
  
 
 0.812
EEI85678.1
Sigma-70 region 2; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.812
EEI85542.1
Sigma-70 region 2; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.812
EEI85323.1
Putative RNA polymerase sigma factor SigM; Pfam: PF04542,PF04545; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.812
EEI87262.1
RNA polymerase sigma factor, sigma-70 family; Pfam: PF08281; InterPro: IPR013249.
  
 
 0.811
EEI85677.1
Hypothetical protein.
  
 
 0.811
sps1
Kinase domain protein; COG: COG0515; Pfam: PF00069,PF03793; InterPro: IPR002290.
   
 
 0.712
EEI85442.1
Putative DNA replication protein DnaC.
  
    0.567
Your Current Organism:
Anaerococcus lactolyticus
NCBI taxonomy Id: 525254
Other names: A. lactolyticus ATCC 51172, Anaerococcus lactolyticus ATCC 51172, Anaerococcus lactolyticus str. ATCC 51172, Anaerococcus lactolyticus strain ATCC 51172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.