Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEI16891.1 | ureC | HMPREF0298_1290 | HMPREF0298_1285 | Urea transporter. | Urease, alpha subunit. | 0.402 |
EEI16891.1 | ureD | HMPREF0298_1290 | HMPREF0298_1289 | Urea transporter. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. Belongs to the UreD family. | 0.504 |
EEI16891.1 | ureE | HMPREF0298_1290 | HMPREF0298_1286 | Urea transporter. | Urease accessory protein UreE domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.520 |
EEI16891.1 | ureF | HMPREF0298_1290 | HMPREF0298_1287 | Urea transporter. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.582 |
EEI16891.1 | ureG | HMPREF0298_1290 | HMPREF0298_1288 | Urea transporter. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.554 |
EEI16956.1 | pabB | HMPREF0298_1281 | HMPREF0298_1282 | Hypothetical protein. | Aminodeoxychorismate synthase, component I. | 0.937 |
EEI16956.1 | ureA | HMPREF0298_1281 | HMPREF0298_1283 | Hypothetical protein. | Urease, gamma subunit; Belongs to the urease gamma subunit family. | 0.479 |
EEI16956.1 | ureB | HMPREF0298_1281 | HMPREF0298_1284 | Hypothetical protein. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.473 |
EEI16956.1 | ureC | HMPREF0298_1281 | HMPREF0298_1285 | Hypothetical protein. | Urease, alpha subunit. | 0.473 |
EEI16956.1 | ureD | HMPREF0298_1281 | HMPREF0298_1289 | Hypothetical protein. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. Belongs to the UreD family. | 0.451 |
EEI16956.1 | ureE | HMPREF0298_1281 | HMPREF0298_1286 | Hypothetical protein. | Urease accessory protein UreE domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.462 |
EEI16956.1 | ureF | HMPREF0298_1281 | HMPREF0298_1287 | Hypothetical protein. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.462 |
EEI16956.1 | ureG | HMPREF0298_1281 | HMPREF0298_1288 | Hypothetical protein. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.451 |
gcp | ureG | HMPREF0298_2211 | HMPREF0298_1288 | Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.626 |
pabB | EEI16956.1 | HMPREF0298_1282 | HMPREF0298_1281 | Aminodeoxychorismate synthase, component I. | Hypothetical protein. | 0.937 |
pabB | ureA | HMPREF0298_1282 | HMPREF0298_1283 | Aminodeoxychorismate synthase, component I. | Urease, gamma subunit; Belongs to the urease gamma subunit family. | 0.479 |
pabB | ureB | HMPREF0298_1282 | HMPREF0298_1284 | Aminodeoxychorismate synthase, component I. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.473 |
pabB | ureC | HMPREF0298_1282 | HMPREF0298_1285 | Aminodeoxychorismate synthase, component I. | Urease, alpha subunit. | 0.473 |
pabB | ureD | HMPREF0298_1282 | HMPREF0298_1289 | Aminodeoxychorismate synthase, component I. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. Belongs to the UreD family. | 0.451 |
pabB | ureE | HMPREF0298_1282 | HMPREF0298_1286 | Aminodeoxychorismate synthase, component I. | Urease accessory protein UreE domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.462 |
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