STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH92396.1RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (137 aa)    
Predicted Functional Partners:
EFH92395.1
Hypothetical protein; COG: COG4472; Pfam: PF06135; InterPro: IPR009309; Belongs to the UPF0297 family.
 
    0.935
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.902
rnj
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
 
     0.846
EFH92397.1
Hypothetical protein.
  
    0.844
EFH92398.1
Transcriptional regulator, Fur family; COG: COG0735; Pfam: PF01475; InterPro: IPR002481; Belongs to the Fur family.
       0.821
EFH92401.1
O-methyltransferase; COG: COG4122; Pfam: PF01596; InterPro: IPR002935.
       0.821
EFH92400.1
Hypothetical protein; Belongs to the UPF0342 family.
       0.815
EFH92402.1
Peptidase, U32 family; COG: COG0826; Pfam: PF01136; InterPro: IPR001539.
       0.703
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.699
EFH92392.1
Transcriptional regulator, Rrf2 family; COG: COG1959; Pfam: PF02082; InterPro: IPR000944.
     
 0.663
Your Current Organism:
Finegoldia magna ATCC 53516
NCBI taxonomy Id: 525282
Other names: F. magna ATCC 53516, Finegoldia magna str. ATCC 53516, Finegoldia magna strain ATCC 53516
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