STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEW54699.1Rhodanese-like protein; COG: COG2897; InterPro: IPR001763. (347 aa)    
Predicted Functional Partners:
trxA-3
Thioredoxin; COG: COG0526; Pfam: PF00085; InterPro: IPR012335.
    
 0.929
EEW54685.1
4Fe-4S binding domain protein; Pfam: PF00037.
 
  
 0.787
iscS2
Aminotransferase, class V; COG: COG1104; Pfam: PF00266; InterPro: IPR000192.
  
 0.787
iscS
Aminotransferase, class V; COG: COG1104; Pfam: PF00266; InterPro: IPR000192.
  
 0.787
EEW54684.1
SNARE-like domain protein; COG: COG0398; Pfam: PF09335; InterPro: IPR015414.
 
    0.772
EEW54687.1
ABC transporter, solute-binding protein; COG: COG4134.
 
  
 0.768
EEW54686.1
Cysteine-rich domain protein; Pfam: PF02754.
 
  
 0.767
EEW54695.1
SNARE-like domain protein; COG: COG0398; Pfam: PF09335; InterPro: IPR015414.
 
    0.763
EEW54692.1
Phosphotransferase enzyme family; Pfam: PF01636; InterPro: IPR002575.
 
     0.757
EEW52945.1
Rhodanese-like protein; COG: COG0607; Pfam: PF00581; InterPro: IPR001763.
 
 
 0.731
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.