STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEW54568.1Hypothetical protein; COG: COG2151; Pfam: PF01883; InterPro: IPR002744. (110 aa)    
Predicted Functional Partners:
EEW54566.1
SUF system FeS assembly protein, NifU family; COG: COG0822; Pfam: PF01592; InterPro: IPR011341.
  
    0.884
sufC
FeS assembly ATPase SufC; COG: COG0396; Pfam: PF00005; InterPro: IPR010230.
 
  
 0.806
sufD
FeS assembly protein SufD; COG: COG0719; Pfam: PF01458; InterPro: IPR011542.
 
   
 0.783
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
    0.763
sufB
FeS assembly protein SufB; COG: COG0719; Pfam: PF01458; InterPro: IPR010231.
     
 0.742
EEW54569.1
DNA-binding helix-turn-helix protein; Pfam: PF01381; InterPro: IPR001387.
       0.732
EEW54570.1
Hypothetical protein.
       0.492
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.