STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEW54042.1ROK family protein; Pfam: PF00480. (372 aa)    
Predicted Functional Partners:
fabG
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
 
  0.877
EEW54040.1
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR000577.
 
  
 0.861
nagC
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600.
 
  
  0.532
EEW52792.1
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600.
  
     0.478
udp
Phosphorylase family; COG: COG2820; Pfam: PF01048; InterPro: IPR000845.
 
     0.464
pgm2
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; COG: COG1109; Pfam: PF02878,PF02879,PF02880,PF00408; InterPro: IPR016055.
 
 
 0.463
gph
Glycoside/pentoside/hexuronide transporter; Pfam: PF00358; InterPro: IPR001927.
  
 
 0.458
xylA
Xylose isomerase; COG: COG2115; Pfam: PF01261; InterPro: IPR013022; Belongs to the xylose isomerase family.
    
 0.451
gph-2
Glycoside/pentoside/hexuronide transporter; InterPro: IPR001927.
 
   
 0.444
glk
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR004654.
 
  
 
0.435
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.