STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gph-2Glycoside/pentoside/hexuronide transporter; InterPro: IPR001927. (471 aa)    
Predicted Functional Partners:
EEW52688.1
Glycosyl hydrolase family 2, TIM barrel domain protein; COG: COG3250; Pfam: PF02837,PF00703,PF02836; InterPro: IPR006103.
 
  
 0.520
EEW52689.1
Beta galactosidase small chain; Pfam: PF02929; InterPro: IPR014718; overlaps another CDS with the same product name.
 
  
 0.511
lacM
Tat pathway signal sequence domain protein; Pfam: PF02929; InterPro: IPR014718; overlaps another CDS with the same product name.
 
  
 0.476
EEW54040.1
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR000577.
 
  
 0.458
EEW54042.1
ROK family protein; Pfam: PF00480.
 
   
 0.444
fabG
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
     0.419
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.