STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
casDCRISPR system CASCADE complex protein CasD; InterPro: IPR010147; overlaps another CDS with the same product name. (236 aa)    
Predicted Functional Partners:
casA
CRISPR system CASCADE complex protein CasA.
 
 
 0.999
EEW53943.1
Putative CRISPR system CASCADE complex protein CasB.
 
 
 0.999
casC
CRISPR system CASCADE complex protein CasC; InterPro: IPR010148; overlaps another CDS with the same product name.
 
 
 0.999
casE
CRISPR system CASCADE complex protein CasE; Pfam: PF08798; InterPro: IPR010179.
 
 
 0.999
cas3
CRISPR-associated helicase Cas3; COG: COG1203; Pfam: PF00271; InterPro: IPR006474.
 
 
 0.993
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.974
EEW53948.1
Putative DNA polymerase III, epsilon subunit; Pfam: PF00929; InterPro: IPR006055.
 
     0.838
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.