STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydABacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585. (477 aa)    
Predicted Functional Partners:
cydB
Cytochrome d ubiquinol oxidase, subunit II; COG: COG1294; Pfam: PF02322; InterPro: IPR003317.
 
 0.999
cydD
Thiol reductant ABC exporter, CydD subunit; COG: COG4988; Pfam: PF00664,PF00005; InterPro: IPR014216.
  
 0.996
cydC
Thiol reductant ABC exporter, CydC subunit; COG: COG4987; Pfam: PF00005; InterPro: IPR014223.
  
 0.995
ndh
Pyridine nucleotide-disulfide oxidoreductase; COG: COG1252; Pfam: PF01266,PF00070; InterPro: IPR001327.
 
   
 0.674
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; COG: COG1575; Pfam: PF01040.
 
     0.609
ptsH
Phosphocarrier, HPr family; COG: COG1925; Pfam: PF00381; InterPro: IPR000032.
     
 0.589
EEW53814.1
Hypothetical protein.
       0.572
EEW53819.1
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949; Belongs to the FPP/GGPP synthase family.
  
     0.463
dinG
Putative DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
      
 0.445
EEW53512.1
Putative thioredoxin-disulfide reductase; COG: COG0492; Pfam: PF07992,PF00070; InterPro: IPR013027.
     
 0.426
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.