STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEW53299.1Peptidase propeptide and YPEB domain protein; Pfam: PF03413. (214 aa)    
Predicted Functional Partners:
hpk
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00672,PF00512,PF02518; InterPro: IPR003594.
 
  
 0.671
phoB
Response regulator receiver domain protein; COG: COG0745; Pfam: PF00072,PF00486; InterPro: IPR001789.
  
  
 0.557
glpQ
Glycerophosphodiester phosphodiesterase family protein; COG: COG0584; Pfam: PF03009; InterPro: IPR004129.
 
     0.516
EEW53319.1
LPXTG-motif cell wall anchor domain protein; Pfam: PF06458,PF00746; InterPro: IPR009459.
  
     0.504
EEW54628.1
CBS domain protein; Pfam: PF00571; InterPro: IPR000644.
  
    0.481
EEW54183.1
Hypothetical protein; Pfam: PF06993; InterPro: IPR009732.
 
     0.467
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
   
   0.449
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
   
   0.449
EEW53239.1
SNARE-like domain protein; Pfam: PF09335; InterPro: IPR015414.
 
     0.406
EEW53227.1
Hypothetical protein; COG: COG1253; Pfam: PF01595,PF00571; InterPro: IPR002550.
   
    0.405
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.