STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEW53108.1DAK2 domain fusion protein YloV; COG: COG1461; Pfam: PF02734; InterPro: IPR004007. (577 aa)    
Predicted Functional Partners:
EEW53141.1
EDD domain protein, DegV family; COG: COG1307; Pfam: PF02645; InterPro: IPR003797.
   0.994
EEW52996.1
EDD domain protein, DegV family; COG: COG1307; Pfam: PF02645; InterPro: IPR003797.
   0.992
EEW53109.1
Hypothetical protein; COG: COG1302; Pfam: PF03780; InterPro: IPR005531.
 
  
 0.988
EEW53581.1
EDD domain protein, DegV family; COG: COG1307; Pfam: PF02645; InterPro: IPR003797.
 
   0.894
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
 
  
 0.836
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.772
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
       0.683
rpmB
Ribosomal protein L28; COG: COG0227; Pfam: PF00830; InterPro: IPR001383; Belongs to the bacterial ribosomal protein bL28 family.
       0.665
EEW52966.1
Hypothetical protein; COG: COG1302; Pfam: PF03780; InterPro: IPR005531.
 
  
 0.568
EEW53111.1
Thiamine diphosphokinase; COG: COG1564; Pfam: PF04263; InterPro: IPR006282.
 
     0.496
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.