STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqeGHAD phosphatase, family IIIA; COG: COG2179; Pfam: PF00702; InterPro: IPR010021. (167 aa)    
Predicted Functional Partners:
yqeH
Ribosome biogenesis GTPase YqeH; COG: COG1161; Pfam: PF01926; InterPro: IPR002917.
 
  
 0.930
EEW52925.1
Hydrolase, HD family; COG: COG1713; Pfam: PF01966; InterPro: IPR005249.
 
  
 0.912
EEW52927.1
RNA-binding protein, YhbY family; COG: COG1534; Pfam: PF01985; InterPro: IPR001890.
  
    0.898
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
    0.867
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
    0.850
EEW52923.1
Methyltransferase domain protein; COG: COG0500; Pfam: PF08242; InterPro: IPR013217.
     
 0.832
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
       0.825
EEW52921.1
Putative ACR, COG1399; COG: COG1399; Pfam: PF02620; InterPro: IPR003772.
       0.681
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.672
rpmF
Ribosomal protein L32; COG: COG0333; Pfam: PF01783; InterPro: IPR002677; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.478
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.