STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbPBacterial sugar transferase; COG: COG2148; Pfam: PF02397; InterPro: IPR003362. (244 aa)    
Predicted Functional Partners:
EEW52719.1
Hypothetical protein; 2.4.1.-.
 
   
 0.915
cps3B
Glycosyltransferase, group 2 family protein; COG: COG1216; Pfam: PF00535; InterPro: IPR001173.
  
 
 0.829
cps1C
Polysaccharide biosynthesis protein; Pfam: PF01943; InterPro: IPR002797.
 
  
 0.813
EEW52721.1
Hypothetical protein.
  
 0.800
EEW52722.1
Hypothetical protein.
  
  
 0.790
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
    0.780
EEW52724.1
Hypothetical protein.
  
 
 0.769
EEW52850.1
Cupin domain protein; Pfam: PF07883,PF00165; InterPro: IPR000005.
  
 
 0.767
rfaG
Glycosyltransferase, group 2 family protein; COG: COG0463; Pfam: PF00535; InterPro: IPR001173.
  
  
 0.745
EEW53785.1
Hypothetical protein.
  
 
 0.669
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.