STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEI20988.1Glycerophosphodiester phosphodiesterase family protein; COG: COG0584; Pfam: PF03009; InterPro: IPR004129. (230 aa)    
Predicted Functional Partners:
EEI20987.1
ABC transporter, solute-binding protein; COG: COG1653; Pfam: PF01547; InterPro: IPR006059.
 
  
 0.669
EEI20986.1
ABC transporter, permease protein; COG: COG0395; Pfam: PF00528; InterPro: IPR000515.
  
 
 0.634
EEI20985.1
ABC transporter, permease protein; COG: COG1175; Pfam: PF00528; InterPro: IPR000515.
  
  
 0.620
ugpC
ABC transporter, ATP-binding protein; COG: COG3839; Pfam: PF00005,PF08402; InterPro: IPR003593.
  
  
 0.573
EEI20044.1
MIP family channel protein; COG: COG0580; Pfam: PF00230; InterPro: IPR000425.
  
 0.533
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COG: COG0558; Pfam: PF01066; InterPro: IPR004570.
    
 0.422
glpK-2
Glycerol kinase; COG: COG0554; Pfam: PF00370,PF02782; InterPro: IPR005999.
 
  
 0.421
EEI20989.1
Hypothetical protein.
       0.409
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.