STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEI19943.1RelA/SpoT domain protein; COG: COG2357; Pfam: PF04607; InterPro: IPR007685. (216 aa)    
Predicted Functional Partners:
relA
RelA/SpoT family protein; COG: COG0317; Pfam: PF01966,PF04607,PF02824; InterPro: IPR004811.
     
 0.942
EEI20866.1
RelA/SpoT domain protein; COG: COG2357; Pfam: PF04607; InterPro: IPR007685.
  
  
 
0.903
EEI20694.1
Hypothetical protein; 3.6.1.11.
  
  
  0.890
ppnK
NAD(+)/NADH kinase; COG: COG0061; Pfam: PF01513; InterPro: IPR002504.
  
    0.885
EEI19766.1
Putative exopolyphosphatase; COG: COG0248; Pfam: PF02541; InterPro: IPR003695.
  
  
  0.872
ppx2
Putative exopolyphosphatase; COG: COG0248; Pfam: PF02541; InterPro: IPR003695.
  
  
  0.871
rluD
Pseudouridine synthase, RluA family; COG: COG0564; Pfam: PF00849; InterPro: IPR006225.
       0.850
EEI19939.1
Putative RNA methyltransferase, TrmH family, group 2; COG: COG0219; Pfam: PF00588; InterPro: IPR001537.
  
    0.776
EEI19940.1
Methyltransferase domain protein; COG: COG0500; Pfam: PF08241.
       0.773
trmE
tRNA modification GTPase TrmE; COG: COG0486; Pfam: PF01926; InterPro: IPR004520.
   
    0.643
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.