STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comCBacterial peptidase A24, N-terminal domain protein; Pfam: PF06750,PF01478; InterPro: IPR010627. (232 aa)    
Predicted Functional Partners:
EEI19032.1
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992.
 
  
 0.902
EEI19031.1
Type II/IV secretion system protein; COG: COG2804; Pfam: PF00437; InterPro: IPR001482.
 
 
 0.899
EEI19871.1
DNA internalization competence protein ComEC/Rec2-like protein; COG: COG2333; Pfam: PF03772,PF00753; InterPro: IPR004797.
 
  
 0.835
dprA
DNA protecting protein DprA; COG: COG0758; Pfam: PF02481; InterPro: IPR003488.
 
  
 0.788
EEI19033.1
Prepilin-type cleavage/methylation N-terminal domain protein; Pfam: PF07963.
 
  
 0.717
comEA
comEA protein; COG: COG1555; Pfam: PF00633; InterPro: IPR004509.
   
  
 0.704
EEI19034.1
Prepilin-type cleavage/methylation N-terminal domain protein.
  
  
 0.663
rpsL
Ribosomal protein S12; COG: COG0048; Pfam: PF00164; InterPro: IPR005679.
       0.647
EEI19830.1
Competence protein CoiA-like protein; COG: COG4469; Pfam: PF06054.
   
    0.564
rpsG
Ribosomal protein S7; COG: COG0049; Pfam: PF00177; InterPro: IPR000235.
       0.564
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.