Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rplRRibosomal protein L18; COG: COG0256; Pfam: PF00861; InterPro: IPR005484. (118 aa)    
Predicted Functional Partners:
rplC
50S ribosomal protein L3; COG: COG0087; Pfam: PF00297; InterPro: IPR000597.
 
 0.999
rplW
Ribosomal protein L23; COG: COG0089; Pfam: PF00276; InterPro: IPR012677.
 
 0.999
rpsS
Ribosomal protein S19; COG: COG0185; Pfam: PF00203; InterPro: IPR005732.
 
 
 0.999
rplV
Ribosomal protein L22; COG: COG0091; Pfam: PF00237; InterPro: IPR001063.
 
 0.999
rpsC
Ribosomal protein S3; COG: COG0092; Pfam: PF00417,PF07650,PF00189; InterPro: IPR005704.
 
 
 0.999
rplP
Ribosomal protein L16; COG: COG0197; Pfam: PF00252; InterPro: IPR000114.
 
 0.999
rpmC
Ribosomal protein L29; COG: COG0255; Pfam: PF00831; InterPro: IPR001854.
  
 0.999
rpsQ
30S ribosomal protein S17; COG: COG0186; Pfam: PF00366; InterPro: IPR000266.
 
 
 0.999
rplN
Ribosomal protein L14; COG: COG0093; Pfam: PF00238; InterPro: IPR005745.
 
 0.999
rplX
Ribosomal protein L24; COG: COG0198; Pfam: PF00467; InterPro: IPR003256.
 
 0.999
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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